Package: dynamAedes 2.2.9
dynamAedes: A Unified Mechanistic Model for the Population Dynamics of Invasive Aedes Mosquitoes
Generalised model for population dynamics of invasive Aedes mosquitoes. Rationale and model structure are described here: Da Re et al. (2021) <doi:10.1016/j.ecoinf.2020.101180> and Da Re et al. (2022) <doi:10.1101/2021.12.21.473628>.
Authors:
dynamAedes_2.2.9.tar.gz
dynamAedes_2.2.9.zip(r-4.5)dynamAedes_2.2.9.zip(r-4.4)dynamAedes_2.2.9.zip(r-4.3)
dynamAedes_2.2.9.tgz(r-4.4-any)dynamAedes_2.2.9.tgz(r-4.3-any)
dynamAedes_2.2.9.tar.gz(r-4.5-noble)dynamAedes_2.2.9.tar.gz(r-4.4-noble)
dynamAedes_2.2.9.tgz(r-4.4-emscripten)dynamAedes_2.2.9.tgz(r-4.3-emscripten)
dynamAedes.pdf |dynamAedes.html✨
dynamAedes/json (API)
NEWS
| # Install 'dynamAedes' in R: |
| install.packages('dynamAedes', repos = c('https://mattmar.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/mattmar/dynamaedes/issues
- AedeslifeHistoryList - Reference list for *Aedes* stages and substages
ecologyinvasive-speciesmodellingmosquitoespathogens
Last updated 6 months agofrom:0f18a8802c. Checks:OK: 7. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Sep 08 2024 |
| R-4.5-win | OK | Sep 08 2024 |
| R-4.5-linux | OK | Sep 08 2024 |
| R-4.4-win | OK | Sep 08 2024 |
| R-4.4-mac | OK | Sep 08 2024 |
| R-4.3-win | OK | Sep 08 2024 |
| R-4.3-mac | OK | Sep 08 2024 |
Exports:adcidicidynamAedes.miccipsipsi_spspreader
Dependencies:abindbackportsbootbroomcarcarDataclicodetoolscolorspacecowplotcpp11DerivdoBydoParalleldplyrdrcfansifarverforeachgenericsgeosphereggplot2gluegtablegtoolsisobanditeratorslabelinglatticelifecyclelme4magrittrMASSMatrixMatrixModelsmgcvmicrobenchmarkminqamodelrmultcompmunsellmvtnormnlmenloptrnnetnumDerivpbkrtestpillarpkgconfigplotrixpurrrquantregR6RColorBrewerRcppRcppEigenrlangsandwichscalesspSparseMstringistringrsurvivalterraTH.datatibbletidyrtidyselectutf8vctrsviridisLitewithrzoo
The punctual scale model
Rendered fromdynamAedes_01_punctual.Rmdusingknitr::rmarkdownon Sep 08 2024.Last update: 2024-01-19
Started: 2023-10-05
The local scale model
Rendered fromdynamAedes_02_local.Rmdusingknitr::rmarkdownon Sep 08 2024.Last update: 2024-01-19
Started: 2023-10-05
The Regional Scale Model
Rendered fromdynamAedes_03_regional.Rmdusingknitr::rmarkdownon Sep 08 2024.Last update: 2024-01-19
Started: 2023-10-05
The uncompressed model output (sub-stage level)
Rendered fromdynamAedes_04_uncompModel.Rmdusingknitr::rmarkdownon Sep 08 2024.Last update: 2024-01-19
Started: 2023-12-11
Temporal downscaling of entomological observations
Rendered fromdynamAedes_05_spreader.Rmdusingknitr::rmarkdownon Sep 08 2024.Last update: 2024-01-08
Started: 2023-12-11
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Summaries of mosquito abundance | adci |
| Reference list for *Aedes* stages and substages | AedeslifeHistoryList |
| Estimate of of mosquito dispersal | dici |
| Life cycle simulation of _Aedes_ mosquitoes | dynamAedes.m |
| S4 class representing the output of dynamAedes.m | dynamAedesClass-class |
| Number of invaded cells | icci |
| Max method for dynamAedesClass Provides the max number of days with at least one propagule in the system (any stage) along iterations. | max,dynamAedesClass-max max,dynamAedesClass-method |
| Min method for dynamAedesClass Provides the min number of days with at least one propagule in the system (any stage) along iterations. | min,dynamAedesClass-method min,dynamAedesClass-min |
| Proportion of successful introductions | psi |
| Probability of successful introduction (spatial) | psi_sp |
| Temporal downscaling of entomological surveillance observations | spreader |
| Summary method for dynamAedesClass Provides a summary of simulations based on the dynamAedesClass. | summary,dynamAedesClass-method summary,dynamAedesClass-summary |
