Package: rasterdiv 0.3.5

rasterdiv: Diversity Indices for Numerical Matrices

Provides methods to calculate diversity indices on numerical matrices based on information theory, as described in Rocchini, Marcantonio and Ricotta (2017) <doi:10.1016/j.ecolind.2016.07.039>, and Rocchini et al. (2021) <doi:10.1101/2021.01.23.427872>.

Authors:Matteo Marcantonio [aut, cre], Martina Iannacito [aut, ctb], Elisa Marchetto [ctb], Elisa Thouverai [aut, ctb], Michele Torresani [aut, ctb], Daniele Da Re [aut], Clara Tattoni [aut], Giovanni Bacaro [aut], Saverio Vicario [aut, ctb], Carlo Ricotta [aut], Duccio Rocchini [aut, ctb]

rasterdiv_0.3.5.tar.gz
rasterdiv_0.3.5.zip(r-4.5)rasterdiv_0.3.5.zip(r-4.4)rasterdiv_0.3.5.zip(r-4.3)
rasterdiv_0.3.5.tgz(r-4.4-any)rasterdiv_0.3.5.tgz(r-4.3-any)
rasterdiv_0.3.5.tar.gz(r-4.5-noble)rasterdiv_0.3.5.tar.gz(r-4.4-noble)
rasterdiv_0.3.5.tgz(r-4.4-emscripten)rasterdiv_0.3.5.tgz(r-4.3-emscripten)
rasterdiv.pdf |rasterdiv.html
rasterdiv/json (API)
NEWS

# Install 'rasterdiv' in R:
install.packages('rasterdiv', repos = c('https://mattmar.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/mattmar/rasterdiv/issues

On CRAN:

25 exports 14 stars 2.28 score 49 dependencies 1 dependents 1 mentions 36 scripts 437 downloads

Last updated 4 months agofrom:00610c64ef. Checks:ERROR: 1 WARNING: 6. Indexed: yes.

TargetResultDate
Doc / VignettesFAILSep 17 2024
R-4.5-winWARNINGSep 17 2024
R-4.5-linuxWARNINGSep 17 2024
R-4.4-winWARNINGSep 17 2024
R-4.4-macWARNINGSep 17 2024
R-4.3-winWARNINGSep 17 2024
R-4.3-macWARNINGSep 17 2024

Exports:.CRE_.CumRes.Deltas.Prob.ReorderBergerParkerBergerParkerPBergerParkerSCREheliPlotheliPrepHillload_copNDVIload_worldopenClusterpaRaoPielouRaoAUCRenyiRenyiPRenyiSShannonShannonPShannonSvalidateInputs

Dependencies:clicodetoolscolorspacecpp11crayondoParallelfansifarverforeachggforceggplot2gluegridExtragtablehmsisobanditeratorslabelinglatticelifecyclemagrittrMASSMatrixmgcvmunsellnlmepillarpkgconfigpolyclipprettyunitsprogressproxyR6RColorBrewerRcppRcppEigenrlangscalessystemfontsterratibbletidyselecttwdtwtweenrutf8vctrsviridisviridisLitewithr

Readme and manuals

Help Manual

Help pageTopics
Cumulative Residual Entropy.CRE_
Calculate Cumulative Residual Probability.CumRes
Calculate Differences Among Values.Deltas
Calculate Point Probability.Prob
Additional supporting functions like `.Reorder`, `.Cumsum`, `.Rev`.Reorder
Berger-Parker's diversity indexBergerParker
Calculate Berger-Parker Index on a MatrixBergerParkerP
Sequential Berger-Parker's diversity indexBergerParkerS
Copernicus Long Term (1999-2017) NDVI Overview (5km)copNDVI
Cumulative Residual Entropy (CRE) FunctionCRE
Create a Helical Plot for Time Series DataheliPlot
Prepare Data for Helical PlottingheliPrep
Hill's index of diversity - Hill numbers (D)Hill
Load Copernicus NDVI dataload_copNDVI
Load Natural Earth world datasetload_world
Area-Based Sequential Parametric Rao's index of quadratic entropy (Q)mpaRaoAreaS
Multidimensional sequential Parametric Rao's index of quadratic entropy (Q)mpaRaoS
Simulated NDVI datasetndviForestTS
Open a Parallel ClusteropenCluster
Parametric Rao's index of quadratic entropy (Q)paRao
Parallelized Parametric Rao's index of quadratic entropy (Q)paRaoP
Sequential Parametric Rao's index of quadratic entropy (Q)paRaoS
Pielou's Evenness IndexPielou
Parallelised Pielou's diversity indexPielouP
Sequential Pielou's diversity indexPielouS
Process Raster Resultsprocess_raster_result
Accumulation function for parametric Rao's index of quadratic entropy (Q)RaoAUC
Renyi Diversity Index CalculationRenyi
Parallel Computation of Renyi's Diversity IndexRenyiP
Sequential Renyi's diversity indexRenyiS
Shannon's Evenness IndexShannon
Calculate Shannon-Wiener Index on a MatrixShannonP
Calculate Shannon-Wiener Index on a MatrixShannonS
Validate Input Parameters for Diversity Index CalculationvalidateInputs
Natural Earth world datasetworld