Package: rasterdiv 0.3.6

rasterdiv: Diversity Indices for Numerical Matrices

Provides methods to calculate diversity indices on numerical matrices based on information theory, as described in Rocchini, Marcantonio and Ricotta (2017) <doi:10.1016/j.ecolind.2016.07.039>, and Rocchini et al. (2021) <doi:10.1101/2021.01.23.427872>.

Authors:Matteo Marcantonio [aut, cre], Martina Iannacito [aut, ctb], Elisa Marchetto [ctb], Elisa Thouverai [aut, ctb], Michele Torresani [aut, ctb], Daniele Da Re [aut], Clara Tattoni [aut], Giovanni Bacaro [aut], Saverio Vicario [aut, ctb], Carlo Ricotta [aut], Duccio Rocchini [aut, ctb]

rasterdiv_0.3.6.tar.gz
rasterdiv_0.3.6.zip(r-4.5)rasterdiv_0.3.6.zip(r-4.4)rasterdiv_0.3.6.zip(r-4.3)
rasterdiv_0.3.6.tgz(r-4.4-any)rasterdiv_0.3.6.tgz(r-4.3-any)
rasterdiv_0.3.6.tar.gz(r-4.5-noble)rasterdiv_0.3.6.tar.gz(r-4.4-noble)
rasterdiv_0.3.6.tgz(r-4.4-emscripten)rasterdiv_0.3.6.tgz(r-4.3-emscripten)
rasterdiv.pdf |rasterdiv.html✨
rasterdiv/json (API)
NEWS

# Install 'rasterdiv' in R:

install.packages('rasterdiv', repos = c('https://mattmar.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/mattmar/rasterdiv/issues

On CRAN:

7.57 score 15 stars 1 packages 37 scripts 527 downloads 1 mentions 25 exports 49 dependencies

Last updated 8 days agofrom:4e05d8d0dc. Checks:OK: 7. Indexed: yes.

Target	Result	Date
Doc / Vignettes	OK	Nov 08 2024
R-4.5-win	OK	Nov 08 2024
R-4.5-linux	OK	Nov 08 2024
R-4.4-win	OK	Nov 08 2024
R-4.4-mac	OK	Nov 08 2024
R-4.3-win	OK	Nov 08 2024
R-4.3-mac	OK	Nov 08 2024

Exports:.CRE_.CumRes .Deltas .Prob .Reorder BergerParker BergerParkerP BergerParkerS CRE heliPlot heliPrep Hill load_copNDVI openCluster paRao Pielou Rao RaoAUC Renyi RenyiP RenyiS Shannon ShannonP ShannonS validateInputs

Dependencies:cli codetools colorspace cpp11 crayon doParallel fansi farver foreach ggforce ggplot2 glue gridExtra gtable hms isoband iterators labeling lattice lifecycle magrittr MASS Matrix mgcv munsell nlme pillar pkgconfig polyclip prettyunits progress proxy R6 RColorBrewer Rcpp RcppEigen rlang scales systemfonts terra tibble tidyselect twdtw tweenr utf8 vctrs viridis viridisLite withr

Area-based Rao's index.

Matteo Marcantonio

Rendered fromrasterdiv_02_Area_based_Rao.Rmdusingknitr::rmarkdownon Nov 08 2024.

Last update: 2024-10-01
Started: 2023-11-10

Derive the Accumulation Rao's Index

Matteo Marcantonio, Jonathan Lenoir, Elisa Thouverai, Duccio Rocchini

Rendered fromrasterdiv_04_Accumulation_Rao.Rmdusingknitr::rmarkdownon Nov 08 2024.

Last update: 2023-11-10
Started: 2023-11-10

Indices of diversity from NDVI.

Matteo Marcantonio, Duccio Rocchini

Rendered fromrasterdiv_01_Basics.Rmdusingknitr::rmarkdownon Nov 08 2024.

Last update: 2023-12-05
Started: 2023-11-10

Multidimension Rao's Index.

Matteo Marcantonio

Rendered fromrasterdiv_03_Advanced_multidimension_Rao.Rmdusingknitr::rmarkdownon Nov 08 2024.

Last update: 2024-10-01
Started: 2023-11-10

Visualising rasterdiv indexes with Helical Plots

Matteo Marcantonio, Elisa Thouverai, Duccio Rocchini

Rendered fromrasterdiv_05_Helical_Plots.Rmdusingknitr::rmarkdownon Nov 08 2024.

Last update: 2024-10-01
Started: 2023-11-10

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Cumulative Residual Entropy	.CRE_
Calculate Cumulative Residual Probability	.CumRes
Calculate Differences Among Values	.Deltas
Calculate Point Probability	.Prob
Additional supporting functions like `.Reorder`, `.Cumsum`, `.Rev`	.Reorder
Berger-Parker's diversity index	BergerParker
Calculate Berger-Parker Index on a Matrix	BergerParkerP
Sequential Berger-Parker's diversity index	BergerParkerS
Copernicus Long Term (1999-2017) NDVI Overview (5km)	copNDVI
Cumulative Residual Entropy (CRE) Function	CRE
Create a Helical Plot for Time Series Data	heliPlot
Prepare Data for Helical Plotting	heliPrep
Hill's index of diversity - Hill numbers (D)	Hill
Load Copernicus NDVI data	load_copNDVI
Area-Based Sequential Parametric Rao's index of quadratic entropy (Q)	mpaRaoAreaS
Multidimensional sequential Parametric Rao's index of quadratic entropy (Q)	mpaRaoS
Simulated NDVI dataset	ndviForestTS
Open a Parallel Cluster	openCluster
Parametric Rao's index of quadratic entropy (Q)	paRao
Parallelized Parametric Rao's index of quadratic entropy (Q)	paRaoP
Sequential Parametric Rao's index of quadratic entropy (Q)	paRaoS
Pielou's Evenness Index	Pielou
Parallelised Pielou's diversity index	PielouP
Sequential Pielou's diversity index	PielouS
Process Raster Results	process_raster_result
Rao's index	Rao
Accumulation function for parametric Rao's index of quadratic entropy (Q)	RaoAUC
Renyi Diversity Index Calculation	Renyi
Parallel Computation of Renyi's Diversity Index	RenyiP
Sequential Renyi's diversity index	RenyiS
Shannon's Evenness Index	Shannon
Calculate Shannon-Wiener Index on a Matrix	ShannonP
Calculate Shannon-Wiener Index on a Matrix	ShannonS
Validate Input Parameters for Diversity Index Calculation	validateInputs

Package: rasterdiv 0.3.6

rasterdiv: Diversity Indices for Numerical Matrices

Area-based Rao's index.

Derive the Accumulation Rao's Index

Indices of diversity from NDVI.

Multidimension Rao's Index.

Visualising rasterdiv indexes with Helical Plots

Citation

Development and contributors

Readme and manuals

Help Manual

Usage by other packages (reverse dependencies)